Generate 2D cell embeddings using tSNE
calc_tsne(fsce, expt = "rnaseq", method = "PCA", n_dims = NULL, perplexity = 30, theta = 0.5, seed = NULL, ...)
fsce | |
---|---|
expt | Data to use for calculating variable features
(default is |
method | dimensionality reduction method for tSNE |
n_dims | number of dimensions for tSNE |
perplexity | tSNE perplexity value. |
theta | tSNE theta value. |
seed | seed for generate reproducible tSNE projection. |
... | additional arguments for |
fce object with tSNE values added to reducedDims
See Rtsne::Rtsne()
for a detailed description of parameters.